Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10088994	0.93[ASN][1000 genomes]
rs10089184	0.95[ASN][1000 genomes]
rs10099943	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10104395	0.95[ASN][1000 genomes]
rs10104633	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10112807	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12547193	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12674861	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28409996	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28433589	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28502676	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28670669	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4329263	0.95[ASN][1000 genomes]
rs6471770	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471771	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471772	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7000999	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7001107	0.95[ASN][1000 genomes]
rs7001175	0.95[ASN][1000 genomes]
rs7017099	0.95[ASN][1000 genomes]
rs7815739	0.90[ASN][1000 genomes]
rs7822365	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9298008	0.95[ASN][1000 genomes]
rs9298009	0.95[ASN][1000 genomes]
rs9298010	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9657027	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60177600-60194800	Weak transcription	Fetal Brain Male	brain
2	chr8:60189600-60191400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:60189800-60191600	Enhancers	HMEC	breast
4	chr8:60190200-60191600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:60190400-60190800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr8:60190400-60190800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:60190400-60190800	Flanking Active TSS	NHEK	skin
8	chr8:60190400-60191000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:60190400-60191000	Enhancers	Rectal Smooth Muscle	rectum
10	chr8:60190400-60191200	Enhancers	NH-A	brain
11	chr8:60190400-60191400	Enhancers	Primary hematopoietic stem cells	blood
12	chr8:60190400-60191400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:60190400-60191600	Enhancers	Hela-S3	cervix
14	chr8:60190400-60191600	Enhancers	HUVEC	blood vessel
15	chr8:60190400-60191600	Enhancers	NHDF-Ad	bronchial
16	chr8:60190400-60191600	Enhancers	Osteobl	bone
17	chr8:60190600-60191000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:60190600-60191200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:60190600-60195200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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