Variant report

Variant	rs12674861
Chromosome Location	chr8:60191331-60191332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10088994	0.97[ASN][1000 genomes]
rs10089184	1.00[ASN][1000 genomes]
rs10091892	0.82[AMR][1000 genomes]
rs10095970	0.83[EUR][1000 genomes]
rs10099943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100411	0.83[EUR][1000 genomes]
rs10103583	0.83[EUR][1000 genomes]
rs10104395	1.00[ASN][1000 genomes]
rs10104633	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105498	0.83[EUR][1000 genomes]
rs10112807	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113240	0.81[EUR][1000 genomes]
rs11780357	0.81[EUR][1000 genomes]
rs12547193	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678634	0.82[AMR][1000 genomes]
rs13438889	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28409996	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28433486	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28433589	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28502676	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28535519	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28670669	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4329263	1.00[ASN][1000 genomes]
rs6471770	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471771	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471772	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6996674	0.83[EUR][1000 genomes]
rs7000999	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001107	1.00[ASN][1000 genomes]
rs7001175	1.00[ASN][1000 genomes]
rs7017099	1.00[ASN][1000 genomes]
rs7815739	0.94[ASN][1000 genomes]
rs7822365	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9298008	1.00[ASN][1000 genomes]
rs9298009	1.00[ASN][1000 genomes]
rs9298010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9657027	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886422	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9886425	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60177600-60194800	Weak transcription	Fetal Brain Male	brain
2	chr8:60189600-60191400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:60189800-60191600	Enhancers	HMEC	breast
4	chr8:60190200-60191600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:60190400-60191400	Enhancers	Primary hematopoietic stem cells	blood
6	chr8:60190400-60191400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:60190400-60191600	Enhancers	Hela-S3	cervix
8	chr8:60190400-60191600	Enhancers	HUVEC	blood vessel
9	chr8:60190400-60191600	Enhancers	NHDF-Ad	bronchial
10	chr8:60190400-60191600	Enhancers	Osteobl	bone
11	chr8:60190600-60195200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:60190800-60191400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:60190800-60191400	Enhancers	NHEK	skin
14	chr8:60190800-60191400	Enhancers	NHLF	lung
15	chr8:60191000-60194600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:60191000-60195000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:60191200-60196200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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