Variant report

Variant	rs10103583
Chromosome Location	chr8:60141615-60141616
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10091892	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10095970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099943	0.83[EUR][1000 genomes]
rs10100411	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104633	0.83[EUR][1000 genomes]
rs10105498	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10110151	0.93[ASN][1000 genomes]
rs10110807	0.85[EUR][1000 genomes]
rs10112807	0.83[EUR][1000 genomes]
rs10113240	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11780357	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12541029	0.85[EUR][1000 genomes]
rs12547193	0.83[EUR][1000 genomes]
rs12547861	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12550554	0.86[EUR][1000 genomes]
rs12674861	0.83[EUR][1000 genomes]
rs12678634	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13438889	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16924700	0.86[EUR][1000 genomes]
rs16924763	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28409996	0.84[EUR][1000 genomes]
rs28433486	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28433589	0.84[EUR][1000 genomes]
rs28502676	0.84[EUR][1000 genomes]
rs28576714	0.93[ASN][1000 genomes]
rs28626080	0.93[ASN][1000 genomes]
rs28670669	0.84[EUR][1000 genomes]
rs5013650	0.82[EUR][1000 genomes]
rs57168034	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471770	0.84[EUR][1000 genomes]
rs6471771	0.84[EUR][1000 genomes]
rs6471772	0.84[EUR][1000 genomes]
rs6996674	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7000999	0.83[EUR][1000 genomes]
rs7822365	0.84[EUR][1000 genomes]
rs7827924	0.86[EUR][1000 genomes]
rs9298010	0.83[EUR][1000 genomes]
rs9657027	0.83[EUR][1000 genomes]
rs9886422	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9886425	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3323551	chr8:60119947-60147653	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv511399	chr8:60132194-60146239	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60132200-60142400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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