Variant report

Variant	rs28433486
Chromosome Location	chr8:60161383-60161384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10091892	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095970	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10099943	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10100411	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10103583	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10104633	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10105498	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110151	1.00[ASN][1000 genomes]
rs10110807	0.84[EUR][1000 genomes]
rs10112807	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10113240	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11780357	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12541029	0.84[EUR][1000 genomes]
rs12547193	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12547861	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12550554	0.85[EUR][1000 genomes]
rs12674861	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12678634	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16924700	0.85[EUR][1000 genomes]
rs16924763	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28409996	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28433589	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28502676	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28576714	1.00[ASN][1000 genomes]
rs28626080	1.00[ASN][1000 genomes]
rs28670669	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5013650	0.82[AMR][1000 genomes]
rs57168034	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471770	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6471771	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6471772	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6996674	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7000999	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7822365	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7827924	0.85[EUR][1000 genomes]
rs9298010	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9657027	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9886422	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9886425	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60160600-60161600	Enhancers	NHEK	skin

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