Variant report

Variant	rs10110807
Chromosome Location	chr8:60066045-60066046
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10087510	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10095970	0.85[EUR][1000 genomes]
rs10100411	0.85[EUR][1000 genomes]
rs10103583	0.85[EUR][1000 genomes]
rs10105498	0.86[EUR][1000 genomes]
rs10113240	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10808698	0.94[CHB][hapmap]
rs11778933	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11780357	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12541029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547861	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12550554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13438889	0.84[EUR][1000 genomes]
rs16924700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28424136	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28433486	0.84[EUR][1000 genomes]
rs28524585	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28673523	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6996674	0.85[EUR][1000 genomes]
rs7001259	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827924	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7832433	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838240	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9693333	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9886422	0.84[EUR][1000 genomes]
rs9886425	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60060800-60069000	Weak transcription	Primary B cells from cord blood	blood
2	chr8:60065800-60066400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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