Variant report

Variant	rs28673523
Chromosome Location	chr8:60058546-60058547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10087510	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105498	0.80[EUR][1000 genomes]
rs10110807	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10113240	0.83[EUR][1000 genomes]
rs10808698	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11778933	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11780357	0.83[EUR][1000 genomes]
rs12334865	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12541029	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12547861	0.85[EUR][1000 genomes]
rs12550554	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16924700	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28424136	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28524585	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001259	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7827924	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7832433	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7838240	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9693333	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60055000-60059200	Weak transcription	Gastric	stomach
2	chr8:60055000-60059400	Weak transcription	Pancreas	Pancrea
3	chr8:60056400-60059400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:60057200-60059800	Enhancers	Dnd41	blood
5	chr8:60057600-60060200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:60058000-60059600	Enhancers	Thymus	Thymus
7	chr8:60058200-60060400	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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