Variant report

Variant	rs10808698
Chromosome Location	chr8:60034428-60034429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10087510	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10094653	0.88[ASN][1000 genomes]
rs10957078	0.83[CHB][hapmap];0.85[CHD][hapmap];0.88[ASN][1000 genomes]
rs11778933	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11787249	0.89[ASN][1000 genomes]
rs12334865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28424136	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28524585	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28673523	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7016025	0.89[ASN][1000 genomes]
rs7837298	0.83[CHB][hapmap];0.85[ASN][1000 genomes]
rs7838240	0.80[ASN][1000 genomes]
rs9693333	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60033200-60034800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:60033200-60036200	Weak transcription	Primary T cells from cord blood	blood
3	chr8:60033400-60034800	Enhancers	Thymus	Thymus
4	chr8:60033400-60037400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:60033600-60037200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:60034000-60035800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:60034200-60043600	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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