Variant report

Variant	rs7838240
Chromosome Location	chr8:60060836-60060837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10087510	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10110807	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10808698	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs11778933	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12334865	0.80[ASN][1000 genomes]
rs12541029	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12550554	0.82[EUR][1000 genomes]
rs16924700	0.82[EUR][1000 genomes]
rs28424136	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28524585	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28673523	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7001259	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7827924	0.82[EUR][1000 genomes]
rs7832433	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9693333	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831327	chr8:60008412-60159152	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60059600-60062600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:60060800-60061600	Enhancers	GM12878-XiMat	blood
3	chr8:60060800-60064200	Weak transcription	Fetal Lung	lung
4	chr8:60060800-60069000	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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