Variant report

Variant	rs28539147
Chromosome Location	chr3:21776342-21776343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11129019	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12489353	0.87[EUR][1000 genomes]
rs17620313	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4276206	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55801703	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73046301	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73048207	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73822035	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7428718	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21770600-21777400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:21771600-21779200	Weak transcription	Aorta	Aorta
3	chr3:21772200-21776400	Weak transcription	NH-A	brain
4	chr3:21772200-21782400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:21775600-21777800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:21776000-21776600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:21776000-21776600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:21776000-21777200	Enhancers	NHDF-Ad	bronchial
9	chr3:21776000-21777800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:21776200-21776600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:21776200-21776600	Enhancers	HMEC	breast
12	chr3:21776200-21776800	Enhancers	HSMMtube	muscle
13	chr3:21776200-21777000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links