Variant report

Variant	rs28540841
Chromosome Location	chr4:78059773-78059774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10016483	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10016676	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10026646	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17397604	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28503908	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4150106	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4302483	0.90[ASN][1000 genomes]
rs4544732	0.83[ASN][1000 genomes]
rs4859474	0.83[ASN][1000 genomes]
rs4859751	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55663411	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs729240	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7438755	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78057600-78062400	Weak transcription	Fetal Intestine Small	intestine
2	chr4:78059000-78061800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:78059000-78067200	Weak transcription	Small Intestine	intestine
4	chr4:78059200-78067200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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