Variant report

Variant	rs55663411
Chromosome Location	chr4:78105507-78105508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78103440..78105968-chr4:78107860..78109437,2	K562	blood:

Variant related genes	Relation type
ENSG00000138764	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10005142	0.83[EUR][1000 genomes]
rs10009384	0.83[EUR][1000 genomes]
rs10016483	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10016676	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10018359	0.83[EUR][1000 genomes]
rs10020351	0.83[EUR][1000 genomes]
rs10026129	0.83[EUR][1000 genomes]
rs10026646	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10026795	0.81[EUR][1000 genomes]
rs10030867	0.82[EUR][1000 genomes]
rs10030957	0.81[EUR][1000 genomes]
rs10856957	0.82[EUR][1000 genomes]
rs11097729	0.83[EUR][1000 genomes]
rs11097730	0.82[EUR][1000 genomes]
rs11097741	0.82[EUR][1000 genomes]
rs11724432	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12500115	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12504397	0.84[EUR][1000 genomes]
rs12508219	0.82[EUR][1000 genomes]
rs17397604	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28503908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28540841	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28648488	0.87[ASN][1000 genomes]
rs4150106	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4285107	0.82[EUR][1000 genomes]
rs4302483	0.89[ASN][1000 genomes]
rs4536958	0.82[EUR][1000 genomes]
rs4538513	0.82[EUR][1000 genomes]
rs4544732	0.96[ASN][1000 genomes]
rs4859474	0.96[ASN][1000 genomes]
rs4859475	0.82[EUR][1000 genomes]
rs4859751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859752	0.84[AMR][1000 genomes]
rs4859753	0.82[EUR][1000 genomes]
rs4859754	0.82[EUR][1000 genomes]
rs4859755	0.82[EUR][1000 genomes]
rs4859758	0.82[EUR][1000 genomes]
rs6532904	0.82[EUR][1000 genomes]
rs6849124	0.86[ASN][1000 genomes]
rs6849534	0.86[ASN][1000 genomes]
rs729240	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7438755	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7672053	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7688769	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7690427	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78089400-78108000	Weak transcription	Left Ventricle	heart
2	chr4:78090400-78109800	Weak transcription	Gastric	stomach
3	chr4:78092200-78106000	Weak transcription	Primary T cells from cord blood	blood
4	chr4:78092600-78108600	Weak transcription	Thymus	Thymus
5	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
6	chr4:78096800-78108200	Weak transcription	Fetal Brain Female	brain
7	chr4:78099000-78108000	Weak transcription	Brain Germinal Matrix	brain
8	chr4:78099400-78109800	Weak transcription	Fetal Stomach	stomach
9	chr4:78099400-78111200	Weak transcription	NHEK	skin
10	chr4:78100000-78108000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:78100200-78108000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:78100800-78105600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:78101000-78108000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:78101200-78108000	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:78101200-78109600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:78104800-78105600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:78105000-78105600	Enhancers	Adipose Nuclei	Adipose

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