Variant report

Variant	rs4859752
Chromosome Location	chr4:78110559-78110560
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78076426..78079425-chr4:78109903..78111665,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138764	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10005142	0.93[EUR][1000 genomes]
rs10009384	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10017014	0.84[EUR][1000 genomes]
rs10018359	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10020351	0.93[EUR][1000 genomes]
rs10026129	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10026795	0.93[EUR][1000 genomes]
rs10030735	1.00[CEU][hapmap]
rs10030867	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10030957	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10856957	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11097728	0.90[EUR][1000 genomes]
rs11097729	0.94[EUR][1000 genomes]
rs11097730	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11097741	0.92[EUR][1000 genomes]
rs11724432	0.82[JPT][hapmap]
rs12500115	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12504397	0.91[EUR][1000 genomes]
rs12508219	0.92[EUR][1000 genomes]
rs1477314	0.96[CEU][hapmap]
rs1559119	0.96[CEU][hapmap]
rs1559122	0.92[CEU][hapmap]
rs17397604	0.84[AMR][1000 genomes]
rs2042228	0.96[CEU][hapmap]
rs28503908	0.85[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs4150106	0.81[AMR][1000 genomes]
rs4285107	0.92[EUR][1000 genomes]
rs4302483	0.82[JPT][hapmap]
rs4536958	0.92[EUR][1000 genomes]
rs4538513	0.92[EUR][1000 genomes]
rs4544732	0.83[JPT][hapmap]
rs4576030	1.00[CEU][hapmap]
rs4582180	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs4859475	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4859477	0.93[CEU][hapmap]
rs4859751	0.85[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes]
rs4859753	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4859754	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4859755	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4859758	0.92[EUR][1000 genomes]
rs55663411	0.84[AMR][1000 genomes]
rs6532904	0.92[EUR][1000 genomes]
rs6532921	0.93[CEU][hapmap]
rs6822794	0.96[CEU][hapmap]
rs6840915	1.00[CEU][hapmap]
rs6845599	1.00[CEU][hapmap]
rs6849124	0.82[JPT][hapmap]
rs6849534	0.82[JPT][hapmap]
rs6857792	1.00[CEU][hapmap]
rs7690427	0.96[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1000730	chr4:78109138-78210296	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:78099400-78111200	Weak transcription	NHEK	skin
3	chr4:78107400-78111200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:78108000-78111000	Enhancers	HSMMtube	muscle
5	chr4:78108000-78112000	Enhancers	Fetal Muscle Leg	muscle
6	chr4:78108200-78111400	Enhancers	Fetal Muscle Trunk	muscle
7	chr4:78109000-78113800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:78109000-78114000	Weak transcription	Thymus	Thymus
9	chr4:78109000-78114200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr4:78109000-78114200	Weak transcription	Fetal Thymus	thymus
11	chr4:78109000-78114400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr4:78109600-78110600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:78109600-78110600	Enhancers	HSMM	muscle
14	chr4:78109600-78110800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:78109600-78112000	Enhancers	Fetal Intestine Large	intestine
16	chr4:78110200-78112000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr4:78110200-78112600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:78110400-78110600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr4:78110400-78111000	Weak transcription	Fetal Intestine Small	intestine
20	chr4:78110400-78114200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:78110400-78114200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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