Variant report

Variant	rs7672053
Chromosome Location	chr4:78100845-78100846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78093090..78096475-chr4:78097818..78101678,3	MCF-7	breast:
2	chr4:77993628..77998489-chr4:78099407..78102075,4	MCF-7	breast:
3	chr4:78089519..78092376-chr4:78099146..78100867,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10016483	0.89[ASN][1000 genomes]
rs10016676	0.89[ASN][1000 genomes]
rs10026646	0.88[ASN][1000 genomes]
rs11724432	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17397604	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28503908	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28648488	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4150106	0.88[ASN][1000 genomes]
rs4302483	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4544732	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4859474	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4859751	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55663411	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6849124	0.87[ASN][1000 genomes]
rs6849534	0.87[ASN][1000 genomes]
rs729240	0.87[ASN][1000 genomes]
rs7438755	0.95[ASN][1000 genomes]
rs7688769	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78084600-78102200	Weak transcription	Spleen	Spleen
2	chr4:78089400-78108000	Weak transcription	Left Ventricle	heart
3	chr4:78090400-78109800	Weak transcription	Gastric	stomach
4	chr4:78091800-78105000	Weak transcription	Adipose Nuclei	Adipose
5	chr4:78092200-78106000	Weak transcription	Primary T cells from cord blood	blood
6	chr4:78092600-78108600	Weak transcription	Thymus	Thymus
7	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
8	chr4:78095400-78101200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:78096800-78108200	Weak transcription	Fetal Brain Female	brain
10	chr4:78097400-78101200	Enhancers	Fetal Muscle Leg	muscle
11	chr4:78097600-78101000	Enhancers	HSMMtube	muscle
12	chr4:78098200-78101000	Enhancers	HSMM	muscle
13	chr4:78099000-78108000	Weak transcription	Brain Germinal Matrix	brain
14	chr4:78099400-78109800	Weak transcription	Fetal Stomach	stomach
15	chr4:78099400-78111200	Weak transcription	NHEK	skin
16	chr4:78100000-78108000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:78100200-78101000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:78100200-78108000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:78100600-78101000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
20	chr4:78100600-78101000	Enhancers	Hela-S3	cervix
21	chr4:78100800-78101000	Enhancers	Esophagus	oesophagus
22	chr4:78100800-78101200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr4:78100800-78105600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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