Variant report

Variant	rs28541962
Chromosome Location	chr14:55566986-55566987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55561171..55564050-chr14:55565929..55567556,2	K562	blood:
2	chr14:55564337..55568132-chr14:55580287..55582932,3	MCF-7	breast:
3	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10149981	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17253660	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2147965	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2147966	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2147967	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2147968	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28489980	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7147753	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs749053	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8004724	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9806061	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
2	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
3	chr14:55560600-55569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:55561200-55568000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55561800-55568400	Weak transcription	HMEC	breast
6	chr14:55561800-55568800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:55562000-55568800	Weak transcription	HSMM	muscle
8	chr14:55563800-55567200	Enhancers	Placenta	Placenta
9	chr14:55564000-55569000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:55564000-55569200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:55564000-55570200	Enhancers	Stomach Mucosa	stomach
12	chr14:55564200-55567000	Weak transcription	Lung	lung
13	chr14:55564200-55568400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:55564200-55568400	Weak transcription	Gastric	stomach
15	chr14:55564200-55568800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:55564200-55569000	Enhancers	Fetal Intestine Small	intestine
17	chr14:55564400-55569800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:55564800-55568600	Weak transcription	Brain Angular Gyrus	brain
19	chr14:55565000-55567200	Enhancers	Fetal Muscle Leg	muscle
20	chr14:55565000-55568600	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:55565000-55568600	Weak transcription	A549	lung
22	chr14:55565000-55568800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:55565200-55567200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:55565200-55567800	Weak transcription	Colonic Mucosa	Colon
25	chr14:55565200-55568600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr14:55565200-55568600	Weak transcription	Brain Substantia Nigra	brain
27	chr14:55565200-55569000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:55565200-55569000	Weak transcription	Brain Anterior Caudate	brain
29	chr14:55565200-55570600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:55565400-55567800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:55565400-55568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:55565400-55568400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr14:55565400-55568600	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:55565400-55568600	Weak transcription	NH-A	brain
35	chr14:55565400-55568800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr14:55565400-55568800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr14:55565400-55568800	Weak transcription	K562	blood
38	chr14:55565400-55569000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:55565600-55567200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr14:55565600-55567600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr14:55565600-55567800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr14:55565600-55567800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:55565600-55568600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:55565600-55568600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr14:55565600-55568600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr14:55565600-55568600	Weak transcription	Spleen	Spleen
47	chr14:55565800-55567000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr14:55565800-55567600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr14:55565800-55568400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr14:55565800-55568600	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links