Variant report

Variant	rs9806061
Chromosome Location	chr14:55561130-55561131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55559803..55562181-chr14:55568621..55570852,2	K562	blood:
2	chr14:55559019..55561497-chr14:55562347..55564712,2	K562	blood:
3	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
4	chr14:55525084..55526733-chr14:55558948..55561565,2	K562	blood:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10149981	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253619	1.00[JPT][hapmap]
rs17253660	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1952438	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs2147965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2147966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2147967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2147968	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28489980	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28541962	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7147753	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs749053	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8004724	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9323279	0.82[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55545000-55561400	Weak transcription	HMEC	breast
2	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
3	chr14:55556400-55561400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:55556400-55561600	Weak transcription	NH-A	brain
5	chr14:55556400-55561800	Weak transcription	NHLF	lung
6	chr14:55556400-55564000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:55557000-55561400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:55557000-55561400	Weak transcription	Osteobl	bone
9	chr14:55557600-55561400	Weak transcription	NHEK	skin
10	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
11	chr14:55559000-55563800	Weak transcription	GM12878-XiMat	blood
12	chr14:55559200-55561600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
14	chr14:55559600-55561400	Weak transcription	Fetal Kidney	kidney
15	chr14:55559600-55564000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:55559600-55564200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:55559800-55563800	Weak transcription	Adipose Nuclei	Adipose
18	chr14:55559800-55564000	Weak transcription	Fetal Intestine Large	intestine
19	chr14:55560000-55561200	Weak transcription	Fetal Muscle Leg	muscle
20	chr14:55560000-55561200	Weak transcription	NHDF-Ad	bronchial
21	chr14:55560000-55564000	Weak transcription	Colonic Mucosa	Colon
22	chr14:55560000-55564000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr14:55560000-55564000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:55560000-55564200	Weak transcription	Fetal Intestine Small	intestine
25	chr14:55560200-55564000	Weak transcription	Stomach Mucosa	stomach
26	chr14:55560400-55564200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr14:55560600-55561200	Enhancers	Fetal Muscle Trunk	muscle
28	chr14:55560600-55562000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:55560600-55562200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:55560600-55569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:55560800-55561400	Enhancers	Hela-S3	cervix
32	chr14:55560800-55561600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:55560800-55562400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:55560800-55563600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:55561000-55561400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:55561000-55561400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:55561000-55561800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:55561000-55561800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr14:55561000-55561800	Enhancers	A549	lung
40	chr14:55561000-55562400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr14:55561000-55562600	Enhancers	Placenta	Placenta

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