The 2.0 version of rSNPBase

Variant report

Variant rs28542502
Chromosome Location chr4:26411395-26411396
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:26375200-26439200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr4:26381600-26439800 Weak transcription Spleen Spleen
3 chr4:26387200-26436000 Weak transcription Placenta Amnion Placenta Amnion
4 chr4:26399800-26437200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr4:26402800-26414600 Weak transcription Pancreas Pancrea
6 chr4:26403000-26411600 Weak transcription Fetal Brain Male brain
7 chr4:26403000-26424800 Weak transcription Fetal Brain Female brain
8 chr4:26403200-26411600 Weak transcription Brain Cingulate Gyrus brain
9 chr4:26404400-26414600 Weak transcription Gastric stomach
10 chr4:26404400-26436000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr4:26404600-26413800 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr4:26404600-26418000 Weak transcription Small Intestine intestine
13 chr4:26406800-26411800 Weak transcription Brain Angular Gyrus brain
14 chr4:26407000-26414600 Weak transcription Stomach Mucosa stomach
15 chr4:26407800-26412000 Strong transcription HSMM muscle
16 chr4:26408000-26439000 Weak transcription Hela-S3 cervix
17 chr4:26408200-26411600 Weak transcription Colon Smooth Muscle Colon
18 chr4:26408400-26413800 Weak transcription Psoas Muscle Psoas
19 chr4:26408400-26414000 Weak transcription Left Ventricle heart
20 chr4:26408400-26422600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr4:26408400-26427000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr4:26408400-26428400 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr4:26408400-26431000 Weak transcription Fetal Kidney kidney
24 chr4:26408400-26431400 Weak transcription Esophagus oesophagus
25 chr4:26408400-26442000 Weak transcription Aorta Aorta
26 chr4:26408600-26411600 Strong transcription Primary T regulatory cells fromperipheralblood blood
27 chr4:26408600-26411600 Weak transcription Brain Anterior Caudate brain
28 chr4:26408600-26411600 Weak transcription Rectal Smooth Muscle rectum
29 chr4:26408600-26411800 Weak transcription Brain Substantia Nigra brain
30 chr4:26408600-26412200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr4:26408600-26412200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr4:26408600-26413600 Weak transcription Fetal Intestine Small intestine
33 chr4:26408600-26413800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr4:26408600-26413800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr4:26408600-26413800 Weak transcription Ovary ovary
36 chr4:26408600-26414000 Weak transcription Fetal Lung lung
37 chr4:26408600-26414200 Weak transcription Duodenum Smooth Muscle Duodenum
38 chr4:26408600-26414200 Weak transcription Fetal Muscle Leg muscle
39 chr4:26408600-26414400 Weak transcription Brain Inferior Temporal Lobe brain
40 chr4:26408600-26414400 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr4:26408600-26414400 Weak transcription Fetal Stomach stomach
42 chr4:26408600-26414600 Weak transcription Lung lung
43 chr4:26408600-26416400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
44 chr4:26408600-26417400 Weak transcription Fetal Muscle Trunk muscle
45 chr4:26408600-26418000 Weak transcription H9 Cell Line embryonic stem cell
46 chr4:26408600-26422200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr4:26408600-26422600 Weak transcription Thymus Thymus
48 chr4:26408600-26425800 Weak transcription Primary T helper naive cells from peripheral blood blood
49 chr4:26408600-26426800 Weak transcription Brain Germinal Matrix brain
50 chr4:26408600-26430800 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015