The 2.0 version of rSNPBase

Variant report

Variant rs28542972
Chromosome Location chr5:127299800-127299801
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:127285800-127303800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr5:127290600-127332000 Weak transcription Aorta Aorta
3 chr5:127292800-127314400 Weak transcription Pancreas Pancrea
4 chr5:127293200-127301800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:127293200-127301800 Weak transcription Ovary ovary
6 chr5:127293200-127303600 Weak transcription Esophagus oesophagus
7 chr5:127293600-127301800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr5:127294400-127302800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr5:127295600-127302600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr5:127295600-127304400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr5:127295800-127301800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr5:127295800-127322800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr5:127296000-127301800 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr5:127296200-127301000 Weak transcription GM12878-XiMat blood
15 chr5:127296200-127301800 Weak transcription Fetal Stomach stomach
16 chr5:127296200-127303000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:127296200-127303800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr5:127296200-127304800 Weak transcription Brain Substantia Nigra brain
19 chr5:127296200-127306000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr5:127296200-127307200 Weak transcription NHLF lung
21 chr5:127296200-127322600 Weak transcription Colon Smooth Muscle Colon
22 chr5:127296400-127301800 Weak transcription Primary monocytes fromperipheralblood blood
23 chr5:127296400-127301800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr5:127296400-127302800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr5:127296400-127302800 Weak transcription Colonic Mucosa Colon
26 chr5:127296400-127302800 Weak transcription HMEC breast
27 chr5:127296400-127302800 Weak transcription NHEK skin
28 chr5:127296400-127303000 Weak transcription Muscle Satellite Cultured Cells --
29 chr5:127296400-127303800 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr5:127296400-127304000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr5:127296400-127304200 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr5:127296400-127304800 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr5:127296400-127304800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr5:127296400-127305200 Weak transcription Brain Anterior Caudate brain
35 chr5:127296400-127306400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr5:127297000-127301800 Weak transcription A549 lung
37 chr5:127297000-127305200 Weak transcription Brain Hippocampus Middle brain
38 chr5:127297600-127302800 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr5:127297600-127303000 Weak transcription Thymus Thymus
40 chr5:127297600-127304600 Weak transcription Stomach Smooth Muscle stomach
41 chr5:127297600-127313200 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr5:127297600-127332000 Weak transcription Primary B cells from cord blood blood
43 chr5:127297800-127300800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr5:127297800-127301800 Weak transcription Primary T cells from cord blood blood
45 chr5:127297800-127301800 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr5:127297800-127301800 Weak transcription Fetal Muscle Leg muscle
47 chr5:127297800-127304000 Weak transcription Primary B cells from peripheral blood blood
48 chr5:127297800-127306400 Weak transcription Psoas Muscle Psoas
49 chr5:127297800-127306400 Weak transcription Right Atrium heart
50 chr5:127297800-127323200 Weak transcription Gastric stomach

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015