Variant report

Variant	rs10463834
Chromosome Location	chr5:127312966-127312967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127258467..127260534-chr5:127310980..127313189,2	MCF-7	breast:
2	chr5:127312557..127314455-chr5:127417975..127420525,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064651	Chromatin interaction
ENSG00000245937	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10037914	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10065448	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10074995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10079317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10900794	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11740438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11740439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11741283	0.90[ASN][1000 genomes]
rs12517005	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12653621	0.82[ASN][1000 genomes]
rs12658023	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13361741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1520246	0.94[JPT][hapmap]
rs2286386	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2409037	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs28473744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28542972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28567046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28591675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28636438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28687461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28736542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28816429	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4836345	0.94[JPT][hapmap]
rs55896045	0.90[ASN][1000 genomes]
rs6877403	0.90[ASN][1000 genomes]
rs6898956	0.90[ASN][1000 genomes]
rs7722601	0.80[ASN][1000 genomes]
rs9327457	0.95[JPT][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127290600-127332000	Weak transcription	Aorta	Aorta
2	chr5:127292800-127314400	Weak transcription	Pancreas	Pancrea
3	chr5:127295800-127322800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:127296200-127322600	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:127297600-127313200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:127297600-127332000	Weak transcription	Primary B cells from cord blood	blood
7	chr5:127297800-127323200	Weak transcription	Gastric	stomach
8	chr5:127297800-127323600	Weak transcription	HSMMtube	muscle
9	chr5:127297800-127358400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:127298600-127314400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:127302400-127321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:127302400-127323400	Weak transcription	Fetal Stomach	stomach
13	chr5:127302600-127322800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:127304000-127333400	Weak transcription	Primary T cells from cord blood	blood
15	chr5:127304200-127316000	Weak transcription	A549	lung
16	chr5:127306600-127333200	Weak transcription	Psoas Muscle	Psoas
17	chr5:127306800-127318400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:127306800-127323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:127306800-127323200	Weak transcription	Left Ventricle	heart
20	chr5:127306800-127323200	Weak transcription	NHEK	skin
21	chr5:127312200-127313400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr5:127312400-127313000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:127312800-127313200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:127312800-127313200	Enhancers	Brain Anterior Caudate	brain
25	chr5:127312800-127314000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:127312800-127314600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr5:127312800-127318000	Enhancers	Stomach Mucosa	stomach
28	chr5:127312800-127323200	Weak transcription	NHLF	lung

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