Variant report

Variant	rs28544156
Chromosome Location	chr4:82387266-82387267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1444891	0.83[ASN][1000 genomes]
rs1444893	0.83[ASN][1000 genomes]
rs2019101	0.83[ASN][1000 genomes]
rs2868215	0.83[ASN][1000 genomes]
rs56087183	0.83[ASN][1000 genomes]
rs62303600	0.83[ASN][1000 genomes]
rs6535250	0.83[ASN][1000 genomes]
rs6535251	0.83[ASN][1000 genomes]
rs7670580	0.83[ASN][1000 genomes]
rs7687318	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82346600-82388400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:82352400-82390000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:82354200-82390800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:82362200-82389800	Weak transcription	Fetal Brain Male	brain
5	chr4:82363600-82390400	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:82363600-82391000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:82368200-82391400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr4:82369400-82390000	Weak transcription	Brain Germinal Matrix	brain
9	chr4:82369600-82388600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:82369600-82391000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:82373600-82390000	Weak transcription	Thymus	Thymus
12	chr4:82375200-82388400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:82377000-82388000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr4:82377200-82389000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:82377800-82390800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:82377800-82391000	Weak transcription	Dnd41	blood
17	chr4:82378200-82390000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:82378600-82390800	Weak transcription	Fetal Stomach	stomach
19	chr4:82378800-82388400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:82379000-82391400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:82379800-82388400	Weak transcription	Fetal Lung	lung
22	chr4:82380400-82388400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr4:82380600-82388400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:82380600-82388800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr4:82380600-82391000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:82380600-82391200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:82380600-82391200	Weak transcription	Placenta	Placenta
28	chr4:82380800-82387600	Enhancers	Brain Angular Gyrus	brain
29	chr4:82380800-82388400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:82381600-82390400	Weak transcription	Fetal Thymus	thymus
31	chr4:82381800-82390400	Weak transcription	Esophagus	oesophagus
32	chr4:82382000-82388800	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:82382000-82390400	Weak transcription	Lung	lung
34	chr4:82382200-82388600	Enhancers	Stomach Mucosa	stomach
35	chr4:82383200-82390000	Weak transcription	Adipose Nuclei	Adipose
36	chr4:82383200-82390400	Weak transcription	Gastric	stomach
37	chr4:82383200-82391000	Weak transcription	Colon Smooth Muscle	Colon
38	chr4:82383600-82388400	Weak transcription	Primary B cells from cord blood	blood
39	chr4:82383600-82390200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:82384000-82389800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr4:82384000-82390000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr4:82385000-82388600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr4:82385200-82388400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:82385400-82390000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr4:82385400-82390000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr4:82385600-82387600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr4:82385800-82387400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:82385800-82388200	Weak transcription	Primary T cells from cord blood	blood
49	chr4:82386200-82387600	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr4:82386200-82387800	Enhancers	Brain Cingulate Gyrus	brain

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