Variant report

Variant	rs56087183
Chromosome Location	chr4:82386464-82386465
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:82381811..82384214-chr4:82385052..82387248,2	K562	blood:
2	chr4:82385615..82387164-chr4:82392080..82394570,2	K562	blood:

Variant related genes	Relation type
ENSG00000138670	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1444891	1.00[ASN][1000 genomes]
rs1444893	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975508	0.90[ASN][1000 genomes]
rs2019101	1.00[ASN][1000 genomes]
rs28544156	0.83[ASN][1000 genomes]
rs28560455	0.90[ASN][1000 genomes]
rs2868215	1.00[ASN][1000 genomes]
rs59520729	0.90[ASN][1000 genomes]
rs59588994	0.90[ASN][1000 genomes]
rs62303600	1.00[ASN][1000 genomes]
rs6535250	1.00[ASN][1000 genomes]
rs6535251	1.00[ASN][1000 genomes]
rs7670580	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687318	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82346600-82386600	Weak transcription	Psoas Muscle	Psoas
2	chr4:82346600-82388400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:82352400-82390000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:82354200-82390800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:82361400-82386600	Weak transcription	Fetal Kidney	kidney
6	chr4:82362200-82389800	Weak transcription	Fetal Brain Male	brain
7	chr4:82363600-82390400	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:82363600-82391000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:82368200-82391400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:82369400-82390000	Weak transcription	Brain Germinal Matrix	brain
11	chr4:82369600-82388600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:82369600-82391000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:82373600-82390000	Weak transcription	Thymus	Thymus
14	chr4:82375000-82386600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:82375200-82388400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:82375800-82386800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:82377000-82386600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:82377000-82388000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:82377200-82389000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:82377800-82390800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:82377800-82391000	Weak transcription	Dnd41	blood
22	chr4:82378200-82390000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:82378600-82390800	Weak transcription	Fetal Stomach	stomach
24	chr4:82378800-82388400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:82379000-82391400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:82379800-82388400	Weak transcription	Fetal Lung	lung
27	chr4:82380400-82388400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr4:82380600-82388400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:82380600-82388800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr4:82380600-82391000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:82380600-82391200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:82380600-82391200	Weak transcription	Placenta	Placenta
33	chr4:82380800-82387000	Enhancers	Small Intestine	intestine
34	chr4:82380800-82387600	Enhancers	Brain Angular Gyrus	brain
35	chr4:82380800-82388400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:82381000-82386800	Enhancers	Brain Anterior Caudate	brain
37	chr4:82381600-82386600	Weak transcription	Fetal Intestine Large	intestine
38	chr4:82381600-82390400	Weak transcription	Fetal Thymus	thymus
39	chr4:82381800-82386600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:82381800-82390400	Weak transcription	Esophagus	oesophagus
41	chr4:82382000-82388800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr4:82382000-82390400	Weak transcription	Lung	lung
43	chr4:82382200-82386600	Weak transcription	Fetal Intestine Small	intestine
44	chr4:82382200-82388600	Enhancers	Stomach Mucosa	stomach
45	chr4:82383200-82386600	Enhancers	Liver	Liver
46	chr4:82383200-82386600	Weak transcription	Colonic Mucosa	Colon
47	chr4:82383200-82390000	Weak transcription	Adipose Nuclei	Adipose
48	chr4:82383200-82390400	Weak transcription	Gastric	stomach
49	chr4:82383200-82391000	Weak transcription	Colon Smooth Muscle	Colon
50	chr4:82383600-82388400	Weak transcription	Primary B cells from cord blood	blood

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