Variant report

Variant	rs28545223
Chromosome Location	chr4:150716831-150716832
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:150716192..150716942-chr4:150818465..150819264,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10015292	1.00[EUR][1000 genomes]
rs10021417	1.00[EUR][1000 genomes]
rs10022183	1.00[EUR][1000 genomes]
rs10023718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023988	1.00[EUR][1000 genomes]
rs10030973	1.00[EUR][1000 genomes]
rs10032786	0.86[EUR][1000 genomes]
rs10213081	1.00[EUR][1000 genomes]
rs1394846	1.00[EUR][1000 genomes]
rs17026442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17026476	1.00[EUR][1000 genomes]
rs17026503	1.00[EUR][1000 genomes]
rs17026506	1.00[EUR][1000 genomes]
rs17026559	0.83[EUR][1000 genomes]
rs17026577	0.83[EUR][1000 genomes]
rs2359689	1.00[EUR][1000 genomes]
rs28390223	1.00[EUR][1000 genomes]
rs28419623	1.00[EUR][1000 genomes]
rs28461843	1.00[EUR][1000 genomes]
rs28533652	0.83[EUR][1000 genomes]
rs28566505	0.83[EUR][1000 genomes]
rs28657505	1.00[EUR][1000 genomes]
rs28695593	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28703191	1.00[EUR][1000 genomes]
rs28709180	1.00[EUR][1000 genomes]
rs4594705	1.00[EUR][1000 genomes]
rs4835596	1.00[EUR][1000 genomes]
rs4835603	1.00[EUR][1000 genomes]
rs4835606	0.83[EUR][1000 genomes]
rs6824353	1.00[EUR][1000 genomes]
rs6831721	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72965326	1.00[EUR][1000 genomes]
rs73857778	1.00[EUR][1000 genomes]
rs73857791	1.00[EUR][1000 genomes]
rs73857798	1.00[EUR][1000 genomes]
rs73859805	0.83[EUR][1000 genomes]
rs7655327	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7665522	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7677933	1.00[EUR][1000 genomes]
rs7690612	1.00[EUR][1000 genomes]
rs7692136	0.83[EUR][1000 genomes]
rs9284658	1.00[EUR][1000 genomes]
rs967371	1.00[EUR][1000 genomes]
rs9991476	0.83[EUR][1000 genomes]
rs9998271	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150714000-150718000	Enhancers	Hela-S3	cervix
2	chr4:150715800-150717200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:150715800-150720800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:150716400-150722200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:150716600-150717000	Enhancers	Right Ventricle	heart

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