Variant report

Variant	rs28709180
Chromosome Location	chr4:150702277-150702278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10015292	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10021417	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10022183	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10023718	1.00[EUR][1000 genomes]
rs10023988	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10030973	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10032786	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10213081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13434843	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1394846	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17026442	1.00[EUR][1000 genomes]
rs17026476	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17026503	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17026506	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17026559	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17026577	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2359689	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28390223	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28419623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28461843	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28533652	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28545223	1.00[EUR][1000 genomes]
rs28566505	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28657505	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28695593	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28703191	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4594705	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4835596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835603	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4835606	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6824353	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831721	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72965326	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73857778	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73857791	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73857792	0.82[AMR][1000 genomes]
rs73857798	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73859805	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7655327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7665522	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7667627	0.87[AMR][1000 genomes]
rs7677933	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7684559	0.93[AMR][1000 genomes]
rs7690612	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7692136	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9284658	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs967371	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9991476	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9998271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv994843	chr4:150699743-150705034	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150700000-150703400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:150700800-150704400	Enhancers	Hela-S3	cervix
3	chr4:150701400-150702400	Weak transcription	NHLF	lung
4	chr4:150701800-150702800	Enhancers	Osteobl	bone
5	chr4:150701800-150703000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:150701800-150703000	Enhancers	HSMM	muscle
7	chr4:150701800-150703200	Enhancers	HMEC	breast
8	chr4:150701800-150703200	Enhancers	NHEK	skin
9	chr4:150702000-150702600	Enhancers	NH-A	brain
10	chr4:150702000-150703000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:150702000-150703000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:150702200-150702600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:150702200-150702800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:150702200-150703000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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