Variant report

Variant	rs28545681
Chromosome Location	chr8:110678904-110678905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10092626	1.00[EUR][1000 genomes]
rs10094516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107091	1.00[EUR][1000 genomes]
rs28490433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28513103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28637942	1.00[EUR][1000 genomes]
rs28674875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28692881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28692984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28699554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28709695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28720787	1.00[EUR][1000 genomes]
rs28741034	1.00[EUR][1000 genomes]
rs73321015	1.00[EUR][1000 genomes]
rs73321024	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110672000-110680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:110678200-110679000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:110678200-110679200	Enhancers	Stomach Smooth Muscle	stomach
4	chr8:110678800-110679800	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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