Variant report
| Variant | rs73321024 |
|---|---|
| Chromosome Location | chr8:110663354-110663355 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GATA2 | chr8:110663140-110663477 | SH-SY5Y | brain: | n/a | chr8:110663313-110663329 chr8:110663316-110663326 chr8:110663318-110663335 |
| 2 | GATA3 | chr8:110663083-110663509 | SH-SY5Y | brain: | n/a | chr8:110663313-110663329 chr8:110663316-110663326 chr8:110663318-110663335 |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SYBU | TF binding region |
| ENSG00000147654 | Chromatin interaction |
| ENSG00000147642 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10092626 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10094516 | 1.00[EUR][1000 genomes] |
| rs10107091 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28490433 | 1.00[EUR][1000 genomes] |
| rs28513103 | 1.00[EUR][1000 genomes] |
| rs28545681 | 1.00[EUR][1000 genomes] |
| rs28637942 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28674875 | 1.00[EUR][1000 genomes] |
| rs28692881 | 1.00[EUR][1000 genomes] |
| rs28692984 | 1.00[EUR][1000 genomes] |
| rs28699554 | 1.00[EUR][1000 genomes] |
| rs28709695 | 1.00[EUR][1000 genomes] |
| rs28720787 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28741034 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73321015 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1849702 | chr8:110594148-110683804 | Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:110661000-110664800 | Enhancers | Fetal Brain Male | brain |
