Variant report

Variant	rs28547168
Chromosome Location	chr8:105328821-105328822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10100804	0.88[AFR][1000 genomes]
rs10101242	0.81[AFR][1000 genomes]
rs28702966	0.88[AFR][1000 genomes]
rs34829634	0.81[AFR][1000 genomes]
rs7844172	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105327800-105330600	Enhancers	Stomach Smooth Muscle	stomach
2	chr8:105328000-105329400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:105328600-105329400	Enhancers	Fetal Stomach	stomach
4	chr8:105328600-105330000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:105328600-105331000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:105328800-105329400	Enhancers	Colon Smooth Muscle	Colon
7	chr8:105328800-105329400	Enhancers	Rectal Smooth Muscle	rectum
8	chr8:105328800-105337800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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