Variant report

Variant	rs28702966
Chromosome Location	chr8:105290647-105290648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10100804	1.00[AFR][1000 genomes]
rs10101242	0.92[AFR][1000 genomes]
rs28547168	0.88[AFR][1000 genomes]
rs34829634	0.92[AFR][1000 genomes]
rs62508139	0.82[AFR][1000 genomes]
rs7844172	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831416	chr8:105137789-105296965	Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105290000-105290800	Enhancers	Dnd41	blood
2	chr8:105290000-105291800	Enhancers	Primary T cells from cord blood	blood
3	chr8:105290200-105291400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:105290200-105291400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:105290200-105291400	Flanking Active TSS	GM12878-XiMat	blood
6	chr8:105290200-105292000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:105290200-105292000	Enhancers	Fetal Thymus	thymus
8	chr8:105290200-105292000	Enhancers	Thymus	Thymus
9	chr8:105290400-105290800	Enhancers	Primary hematopoietic stem cells	blood
10	chr8:105290400-105291200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:105290400-105291400	Enhancers	HMEC	breast
12	chr8:105290400-105291400	Enhancers	Osteobl	bone
13	chr8:105290400-105291600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:105290400-105291800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:105290400-105296200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:105290600-105291000	Enhancers	Liver	Liver
17	chr8:105290600-105291400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:105290600-105291400	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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