Variant report

Variant	rs28548034
Chromosome Location	chr4:98036299-98036300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10004925	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10015005	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10015575	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10016607	0.81[EUR][1000 genomes]
rs10023781	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10028618	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10030881	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10031043	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10031310	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10033252	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10470948	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13107952	0.87[EUR][1000 genomes]
rs13118118	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13119743	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13125099	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13128094	0.90[EUR][1000 genomes]
rs13143980	0.90[EUR][1000 genomes]
rs13148788	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13151304	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17026400	0.82[AFR][1000 genomes]
rs28422018	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28606593	0.92[EUR][1000 genomes]
rs28624879	0.90[EUR][1000 genomes]
rs28761187	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28842582	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28862933	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28865368	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28880998	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2903082	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34082518	0.90[EUR][1000 genomes]
rs34175954	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34415867	0.92[EUR][1000 genomes]
rs34818848	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34945220	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35010781	0.90[EUR][1000 genomes]
rs35555246	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36099950	0.87[EUR][1000 genomes]
rs4299587	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4312765	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4317211	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4456961	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4487347	0.90[EUR][1000 genomes]
rs4574418	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4618318	0.90[EUR][1000 genomes]
rs55911601	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66711826	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67438438	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6822998	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6823166	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6848535	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71585379	0.85[EUR][1000 genomes]
rs71606964	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71606965	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7690605	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7691473	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9715346	0.87[EUR][1000 genomes]
rs9993126	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9993378	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9998114	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98030200-98036800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:98035800-98036400	Enhancers	Fetal Intestine Large	intestine
3	chr4:98036000-98037400	Enhancers	Fetal Intestine Small	intestine

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