Variant report

Variant	rs71585379
Chromosome Location	chr4:98050510-98050511
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10004925	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10015005	0.81[AMR][1000 genomes]
rs10015575	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10023781	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10028618	0.81[AMR][1000 genomes]
rs10030881	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10031043	0.86[EUR][1000 genomes]
rs10031310	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10033252	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10470948	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13118118	0.81[AMR][1000 genomes]
rs13119743	0.86[EUR][1000 genomes]
rs13125099	0.86[EUR][1000 genomes]
rs13128094	0.83[EUR][1000 genomes]
rs13143980	0.83[EUR][1000 genomes]
rs13148788	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13151304	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28422018	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28548034	0.85[EUR][1000 genomes]
rs28606593	0.84[EUR][1000 genomes]
rs28624879	0.83[EUR][1000 genomes]
rs28761187	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28842582	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28862933	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28865368	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28880998	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2903082	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34082518	0.83[EUR][1000 genomes]
rs34175954	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34818848	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34945220	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35010781	0.83[EUR][1000 genomes]
rs35555246	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4299587	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4312765	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4317211	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4456961	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4487347	0.83[EUR][1000 genomes]
rs4574418	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4618318	0.83[EUR][1000 genomes]
rs55911601	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66711826	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67438438	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6822998	0.81[AMR][1000 genomes]
rs6823166	0.81[AMR][1000 genomes]
rs6848535	0.81[AMR][1000 genomes]
rs71606964	0.81[AMR][1000 genomes]
rs71606965	0.86[EUR][1000 genomes]
rs7690605	0.88[AMR][1000 genomes]
rs7691473	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9993126	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9993378	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9998114	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3370026	chr4:98044823-98067071	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98049800-98051400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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