Variant report

Variant	rs28550456
Chromosome Location	chr8:125105617-125105618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125102376..125106227-chr8:125106854..125110731,4	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10094266	0.84[AMR][1000 genomes]
rs10094533	0.84[AMR][1000 genomes]
rs10102566	0.90[ASN][1000 genomes]
rs10106600	1.00[ASN][1000 genomes]
rs10113693	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10113772	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10808531	0.80[ASN][1000 genomes]
rs10956164	0.96[ASN][1000 genomes]
rs12541155	0.98[ASN][1000 genomes]
rs12545670	0.83[AMR][1000 genomes]
rs13254252	0.82[ASN][1000 genomes]
rs13263969	0.81[ASN][1000 genomes]
rs2069078	0.97[ASN][1000 genomes]
rs4294164	0.83[ASN][1000 genomes]
rs4330676	0.89[ASN][1000 genomes]
rs4345538	0.87[ASN][1000 genomes]
rs4374969	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4410885	0.88[ASN][1000 genomes]
rs4446721	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4460351	0.82[ASN][1000 genomes]
rs4483139	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4484683	0.88[ASN][1000 genomes]
rs4500064	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4623400	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4871462	0.85[ASN][1000 genomes]
rs6470217	0.98[ASN][1000 genomes]
rs6470218	0.87[ASN][1000 genomes]
rs6470219	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6470220	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7009406	0.81[AMR][1000 genomes]
rs7013226	0.81[ASN][1000 genomes]
rs7822018	0.84[ASN][1000 genomes]
rs7822412	0.95[ASN][1000 genomes]
rs7822557	0.84[ASN][1000 genomes]
rs7836974	0.92[ASN][1000 genomes]
rs9297683	0.84[AMR][1000 genomes]
rs9297684	0.80[AMR][1000 genomes]
rs9297685	0.99[ASN][1000 genomes]
rs9643188	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831452	chr8:125099708-125259926	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv19498	chr8:125101681-125110686	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125076800-125121800	Weak transcription	Fetal Stomach	stomach
2	chr8:125095400-125107000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:125100800-125124600	Weak transcription	Gastric	stomach
4	chr8:125101600-125107400	Weak transcription	Stomach Mucosa	stomach

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