Variant report

Variant	rs285557
Chromosome Location	chr12:41929390-41929391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11180999	0.89[ASN][1000 genomes]
rs2256412	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2468310	0.90[ASN][1000 genomes]
rs2468313	0.88[EUR][1000 genomes]
rs2710263	0.88[EUR][1000 genomes]
rs2710264	0.90[ASN][1000 genomes]
rs2710265	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2733284	0.90[ASN][1000 genomes]
rs2733285	0.80[ASN][1000 genomes]
rs285556	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs285560	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs285575	0.87[ASN][1000 genomes]
rs285590	0.90[ASN][1000 genomes]
rs285592	0.90[ASN][1000 genomes]
rs285593	0.90[ASN][1000 genomes]
rs285595	0.90[ASN][1000 genomes]
rs7954518	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41925600-41949800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:41925800-41944800	Weak transcription	Brain Germinal Matrix	brain
3	chr12:41928800-41929400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:41928800-41929800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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