Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10506195	1.00[JPT][hapmap]
rs11615166	1.00[JPT][hapmap]
rs12811069	1.00[JPT][hapmap]
rs12822018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12823312	1.00[JPT][hapmap]
rs1379779	1.00[JPT][hapmap]
rs1458170	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17129378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17129392	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17129427	1.00[JPT][hapmap]
rs17578886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17768388	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1902905	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2710263	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2710265	0.92[EUR][1000 genomes]
rs285557	0.88[EUR][1000 genomes]
rs34057539	0.94[ASN][1000 genomes]
rs34931927	0.92[ASN][1000 genomes]
rs36038624	0.96[ASN][1000 genomes]
rs71451530	0.92[ASN][1000 genomes]
rs73130614	0.90[ASN][1000 genomes]
rs7957589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv826349	chr12:41878846-41911495	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41869600-41905200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41877400-41903600	Weak transcription	Ovary	ovary
3	chr12:41887600-41901400	Weak transcription	Brain Substantia Nigra	brain
4	chr12:41887800-41893600	Weak transcription	Brain Germinal Matrix	brain
5	chr12:41890400-41895200	Weak transcription	Psoas Muscle	Psoas
6	chr12:41891400-41893400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:41891800-41893400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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