Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10506195	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs11611727	0.87[YRI][hapmap]
rs11615166	1.00[JPT][hapmap]
rs12811069	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs12822018	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12823312	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs1379779	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs1458170	0.84[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17129378	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129392	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17129427	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs17129456	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs17768388	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1902905	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2468313	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2710263	1.00[JPT][hapmap]
rs34057539	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34931927	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35032376	0.84[EUR][1000 genomes]
rs35753665	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36020206	0.84[EUR][1000 genomes]
rs36038624	0.94[ASN][1000 genomes]
rs71451530	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73130614	0.96[ASN][1000 genomes]
rs7957589	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3501985	chr12:41847710-41863530	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3501996	chr12:41847724-41863526	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41858400-41863000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr12:41860200-41869200	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41861000-41866600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:41861000-41866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:41861400-41862800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:41861400-41870000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:41861400-41870400	Weak transcription	Brain Anterior Caudate	brain
8	chr12:41862000-41863000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:41862000-41866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr12:41862000-41869800	Weak transcription	Brain Germinal Matrix	brain
11	chr12:41862000-41870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:41862200-41863200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:41862200-41866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr12:41862200-41869400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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