Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10506195	0.88[EUR][1000 genomes]
rs11615166	0.90[EUR][1000 genomes]
rs12811069	0.88[EUR][1000 genomes]
rs12822018	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12823312	0.88[EUR][1000 genomes]
rs1379779	0.88[EUR][1000 genomes]
rs1458170	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17129378	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129392	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17129427	0.90[EUR][1000 genomes]
rs17578886	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902905	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2468313	0.94[ASN][1000 genomes]
rs34298736	0.88[EUR][1000 genomes]
rs34607783	0.88[EUR][1000 genomes]
rs34931927	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35002976	0.88[EUR][1000 genomes]
rs35667109	0.86[EUR][1000 genomes]
rs36038624	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57639356	0.88[EUR][1000 genomes]
rs58667777	0.88[EUR][1000 genomes]
rs67541586	0.87[EUR][1000 genomes]
rs71451530	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73130614	0.96[ASN][1000 genomes]
rs7957589	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3501985	chr12:41847710-41863530	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3501996	chr12:41847724-41863526	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41860200-41869200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41861000-41866600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:41861000-41866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:41861400-41870000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:41861400-41870400	Weak transcription	Brain Anterior Caudate	brain
6	chr12:41862000-41866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:41862000-41869800	Weak transcription	Brain Germinal Matrix	brain
8	chr12:41862000-41870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:41862200-41866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:41862200-41869400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr12:41863000-41866400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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