Variant report

Variant	rs2855706
Chromosome Location	chr12:12012801-12012802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12306221	1.00[MEX][hapmap]
rs16907274	1.00[MEX][hapmap]
rs2710267	1.00[MEX][hapmap]
rs2710268	0.87[AMR][1000 genomes]
rs2710284	1.00[MEX][hapmap]
rs2724602	1.00[MEX][hapmap]
rs2856340	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832331	chr12:11925095-12114451	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11980800-12022600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:11985800-12014800	Weak transcription	Fetal Brain Female	brain
3	chr12:11987000-12013000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:11987600-12038000	Weak transcription	Hela-S3	cervix
5	chr12:11989400-12023000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:11992600-12014600	Weak transcription	NHEK	skin
7	chr12:11992600-12015600	Weak transcription	NHLF	lung
8	chr12:11992600-12015800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr12:11993000-12019000	Weak transcription	A549	lung
10	chr12:11993600-12014000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr12:11994600-12013000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr12:11995600-12014000	Weak transcription	Psoas Muscle	Psoas
13	chr12:11996400-12022600	Weak transcription	HSMM	muscle
14	chr12:12004000-12013600	Weak transcription	HepG2	liver
15	chr12:12004600-12016600	Weak transcription	Ovary	ovary
16	chr12:12005000-12022400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr12:12006200-12014800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:12006200-12015200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:12006400-12014000	Strong transcription	Osteobl	bone
20	chr12:12006800-12015600	Weak transcription	NHDF-Ad	bronchial
21	chr12:12007400-12013000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr12:12008600-12013400	Strong transcription	Fetal Lung	lung
23	chr12:12008800-12013000	Weak transcription	Right Atrium	heart
24	chr12:12008800-12018600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr12:12009000-12018800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr12:12009400-12013200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr12:12009400-12017000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr12:12009400-12017800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr12:12009400-12030800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr12:12009600-12013000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr12:12009600-12013000	Weak transcription	Lung	lung
32	chr12:12009600-12013000	Strong transcription	Dnd41	blood
33	chr12:12009600-12013200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr12:12009600-12013600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr12:12009600-12013800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr12:12009600-12013800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:12009600-12014000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr12:12009600-12014200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr12:12009600-12014200	Strong transcription	Thymus	Thymus
40	chr12:12009600-12014200	Strong transcription	GM12878-XiMat	blood
41	chr12:12009600-12014400	Weak transcription	Pancreas	Pancrea
42	chr12:12009600-12014600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr12:12009600-12014600	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr12:12009600-12015200	Weak transcription	Small Intestine	intestine
45	chr12:12009600-12016400	Weak transcription	Colonic Mucosa	Colon
46	chr12:12009600-12019400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr12:12009800-12013200	Strong transcription	HUVEC	blood vessel
48	chr12:12009800-12014400	Strong transcription	NH-A	brain
49	chr12:12010000-12013800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr12:12010000-12013800	Weak transcription	Primary T cells fromperipheralblood	blood

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