Variant report

Variant	rs28561820
Chromosome Location	chr14:24821299-24821300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24820066..24821723-chr14:24836134..24837695,2	K562	blood:
2	chr14:24816528..24849574-chr14:24893305..24914155,145	MCF-7	breast:
3	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139899	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000100445	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10483285	0.89[ASN][1000 genomes]
rs12895908	0.88[ASN][1000 genomes]
rs2332324	0.88[ASN][1000 genomes]
rs3212241	0.86[ASN][1000 genomes]
rs3212245	0.86[ASN][1000 genomes]
rs3212254	0.93[ASN][1000 genomes]
rs57167043	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24816600-24823000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:24818600-24824600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:24819800-24821400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:24820400-24824000	Enhancers	Osteobl	bone
5	chr14:24820600-24821600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:24820600-24821600	Enhancers	Fetal Kidney	kidney
7	chr14:24820600-24821600	Enhancers	HSMM	muscle
8	chr14:24820600-24821800	Enhancers	NHLF	lung
9	chr14:24820600-24823400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:24820600-24824800	Enhancers	NHDF-Ad	bronchial
11	chr14:24820800-24821400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:24820800-24821400	Enhancers	Fetal Lung	lung
13	chr14:24820800-24821600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:24820800-24821600	Enhancers	Stomach Mucosa	stomach
15	chr14:24821000-24821400	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr14:24821000-24821600	Enhancers	Fetal Stomach	stomach
17	chr14:24821000-24822200	Weak transcription	Fetal Intestine Large	intestine
18	chr14:24821000-24823400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:24821200-24821400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
20	chr14:24821200-24821600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:24821200-24821600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr14:24821200-24822400	Weak transcription	Fetal Intestine Small	intestine
23	chr14:24821200-24822800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr14:24821200-24822800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr14:24821200-24823000	Weak transcription	Liver	Liver
26	chr14:24821200-24823000	Weak transcription	HMEC	breast
27	chr14:24821200-24823000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr14:24821200-24823200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:24821200-24824000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:24821200-24824600	Weak transcription	Esophagus	oesophagus
31	chr14:24821200-24829200	Weak transcription	Placenta	Placenta

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