Variant report

Variant	rs12895908
Chromosome Location	chr14:24813821-24813822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10483285	0.83[ASN][1000 genomes]
rs12891456	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17102976	0.88[ASN][1000 genomes]
rs2144491	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2332324	1.00[ASN][1000 genomes]
rs28561820	0.88[ASN][1000 genomes]
rs3212241	0.98[ASN][1000 genomes]
rs3212245	0.98[ASN][1000 genomes]
rs3212254	0.88[ASN][1000 genomes]
rs4981508	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4982897	0.87[ASN][1000 genomes]
rs57167043	0.88[ASN][1000 genomes]
rs67627083	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24809400-24816200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:24809600-24821000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:24812600-24814400	Enhancers	Fetal Intestine Large	intestine
4	chr14:24813400-24816000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr14:24813600-24814000	Weak transcription	Fetal Intestine Small	intestine
6	chr14:24813600-24816400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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