Variant report

Variant	rs4982897
Chromosome Location	chr14:24797700-24797701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24796879..24804920-chr14:24831628..24840088,12	MCF-7	breast:
2	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
3	chr14:24791358..24808812-chr14:24895309..24913599,55	K562	blood:
4	chr14:24781460..24810019-chr14:24892340..24914262,110	MCF-7	breast:
5	chr14:24796552..24799266-chr14:24908909..24911628,3	K562	blood:
6	chr14:24796459..24799989-chr14:24897944..24901736,5	K562	blood:
7	chr14:24796718..24800207-chr14:24803965..24807105,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100445	Chromatin interaction
ENSG00000129465	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000258973	Chromatin interaction
ENSG00000129467	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10483285	0.85[ASN][1000 genomes]
rs12895908	0.87[ASN][1000 genomes]
rs17102976	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2332324	0.87[ASN][1000 genomes]
rs3212241	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3212245	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3212254	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv564060	chr14:24776401-24809795	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv516237	chr14:24793762-24799358	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24786200-24801600	Weak transcription	Left Ventricle	heart
2	chr14:24787000-24801200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:24788400-24801000	Weak transcription	Gastric	stomach
4	chr14:24792200-24798200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:24793800-24801000	Weak transcription	Right Ventricle	heart
6	chr14:24794800-24801200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:24794800-24801200	Weak transcription	K562	blood
8	chr14:24795000-24801200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:24795600-24801600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:24796400-24798400	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:24796400-24798400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr14:24796800-24801000	Weak transcription	Colonic Mucosa	Colon
13	chr14:24796800-24801600	Weak transcription	Right Atrium	heart
14	chr14:24796800-24801600	Weak transcription	Osteobl	bone
15	chr14:24797000-24798000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr14:24797000-24798000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr14:24797000-24798000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:24797000-24798000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr14:24797000-24798000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr14:24797000-24798000	Weak transcription	Placenta	Placenta
21	chr14:24797000-24798000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr14:24797000-24798200	Weak transcription	Primary B cells from cord blood	blood
23	chr14:24797000-24798200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr14:24797000-24798200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:24797000-24798200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:24797000-24798200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr14:24797000-24798200	Weak transcription	Adipose Nuclei	Adipose
28	chr14:24797000-24798200	Weak transcription	Spleen	Spleen
29	chr14:24797000-24798400	Weak transcription	Primary T cells from cord blood	blood
30	chr14:24797000-24798400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr14:24797000-24798600	Weak transcription	Fetal Muscle Leg	muscle
32	chr14:24797000-24800400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:24797000-24800800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr14:24797000-24801000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:24797000-24801000	Weak transcription	Liver	Liver
36	chr14:24797000-24801000	Weak transcription	Lung	lung
37	chr14:24797000-24801000	Weak transcription	Pancreas	Pancrea
38	chr14:24797000-24801000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr14:24797000-24801000	Weak transcription	Dnd41	blood
40	chr14:24797000-24801400	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr14:24797000-24801400	Weak transcription	HUVEC	blood vessel
42	chr14:24797200-24798200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr14:24797200-24798200	Weak transcription	Fetal Thymus	thymus
44	chr14:24797200-24798400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr14:24797400-24797800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr14:24797400-24797800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:24797600-24799800	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr14:24797600-24800000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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