Variant report

Variant	rs67627083
Chromosome Location	chr14:24816091-24816092
allele	AT/GC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000100445	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000139899	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12891456	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12895908	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2332324	0.90[ASN][1000 genomes]
rs3212241	0.89[ASN][1000 genomes]
rs3212245	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24809400-24816200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:24809600-24821000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:24813600-24816400	Weak transcription	K562	blood
4	chr14:24814400-24816200	Weak transcription	Fetal Intestine Large	intestine
5	chr14:24815800-24816600	Enhancers	Left Ventricle	heart
6	chr14:24815800-24816800	Enhancers	Stomach Mucosa	stomach
7	chr14:24816000-24816200	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr14:24816000-24816200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr14:24816000-24816200	Enhancers	Small Intestine	intestine
10	chr14:24816000-24816400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr14:24816000-24816600	Enhancers	Gastric	stomach
12	chr14:24816000-24816600	Enhancers	Lung	lung
13	chr14:24816000-24816800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:24816000-24816800	Enhancers	Adipose Nuclei	Adipose
15	chr14:24816000-24816800	Enhancers	Duodenum Mucosa	Duodenum
16	chr14:24816000-24816800	Enhancers	Spleen	Spleen
17	chr14:24816000-24817200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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