Variant report

Variant	rs28564004
Chromosome Location	chr9:92725505-92725506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs41274971	0.88[EUR][1000 genomes]
rs55855831	0.88[EUR][1000 genomes]
rs56373906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72752995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72755051	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424181	chr9:92723632-92727930	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92723400-92725600	Enhancers	Lung	lung
2	chr9:92723400-92725800	Enhancers	Spleen	Spleen
3	chr9:92723600-92726000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:92723600-92727800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:92724000-92725600	Enhancers	Esophagus	oesophagus
6	chr9:92724000-92725600	Enhancers	Placenta	Placenta
7	chr9:92724000-92727400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:92724200-92725800	Enhancers	Primary B cells from cord blood	blood
9	chr9:92724400-92727000	Weak transcription	Right Atrium	heart
10	chr9:92724800-92726200	Weak transcription	Liver	Liver
11	chr9:92724800-92729800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:92724800-92732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:92725000-92726000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:92725000-92726800	Weak transcription	NHDF-Ad	bronchial
15	chr9:92725000-92727600	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:92725000-92729600	Weak transcription	Fetal Intestine Small	intestine
17	chr9:92725200-92726800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:92725400-92731000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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