Variant report

Variant	rs55855831
Chromosome Location	chr9:92801296-92801297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1074176	1.00[AFR][1000 genomes]
rs10820827	1.00[AFR][1000 genomes]
rs10991759	1.00[AFR][1000 genomes]
rs10993747	1.00[AFR][1000 genomes]
rs1992545	1.00[AFR][1000 genomes]
rs28534712	1.00[AFR][1000 genomes]
rs28564004	0.88[EUR][1000 genomes]
rs41274971	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs547974	1.00[AFR][1000 genomes]
rs548196	1.00[AFR][1000 genomes]
rs56373906	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72752995	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72755016	1.00[AFR][1000 genomes]
rs72755051	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv893562	chr9:92794721-92850878	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92789600-92806400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:92797600-92801600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:92799400-92802200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:92800000-92806200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:92800000-92807200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:92800400-92801400	Enhancers	Brain Germinal Matrix	brain
7	chr9:92801000-92801400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:92801000-92801400	Enhancers	Brain Anterior Caudate	brain
9	chr9:92801200-92801400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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