Variant report

Variant	rs548196
Chromosome Location	chr9:92821015-92821016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10733741	1.00[MKK][hapmap]
rs1074176	1.00[ASW][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.85[MEX][hapmap];1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10820827	1.00[ASW][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.85[MEX][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10991759	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10993747	1.00[ASW][hapmap];0.85[MEX][hapmap];1.00[AFR][1000 genomes]
rs1992545	0.93[CHB][hapmap];1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs28534712	1.00[AFR][1000 genomes]
rs41274971	1.00[AFR][1000 genomes]
rs4744096	1.00[MKK][hapmap]
rs547974	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55855831	1.00[AFR][1000 genomes]
rs56373906	1.00[AFR][1000 genomes]
rs641050	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs652913	0.80[MEX][hapmap]
rs72752995	1.00[AFR][1000 genomes]
rs72755016	1.00[AFR][1000 genomes]
rs72755051	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893562	chr9:92794721-92850878	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92815600-92823600	Weak transcription	Gastric	stomach
2	chr9:92817800-92826000	Weak transcription	Liver	Liver
3	chr9:92818400-92822600	Weak transcription	Pancreas	Pancrea
4	chr9:92820600-92821200	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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