Variant report

Variant	rs28565350
Chromosome Location	chr3:55886701-55886702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13314858	1.00[AFR][1000 genomes]
rs28450140	1.00[AFR][1000 genomes]
rs6785716	1.00[AFR][1000 genomes]
rs72877152	1.00[AFR][1000 genomes]
rs9811607	1.00[AFR][1000 genomes]
rs9815229	1.00[AFR][1000 genomes]
rs9824953	1.00[AFR][1000 genomes]
rs9831205	1.00[AFR][1000 genomes]
rs9848245	1.00[AFR][1000 genomes]
rs9850977	1.00[AFR][1000 genomes]
rs9851652	1.00[AFR][1000 genomes]
rs9868187	1.00[AFR][1000 genomes]
rs9875858	1.00[AFR][1000 genomes]
rs9875894	1.00[AFR][1000 genomes]
rs9875929	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55879000-55888000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:55886200-55888600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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