Variant report

Variant	rs28565923
Chromosome Location	chr15:92099327-92099328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11857102	0.91[ASN][1000 genomes]
rs28419666	1.00[ASN][1000 genomes]
rs28449942	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28663369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57386562	1.00[EUR][1000 genomes]
rs58614601	1.00[EUR][1000 genomes]
rs61152865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165991	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7181048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74028273	1.00[EUR][1000 genomes]
rs74028274	1.00[EUR][1000 genomes]
rs74028277	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833095	chr15:92006793-92151176	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92093000-92101400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:92093200-92102000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:92096600-92100800	Weak transcription	Brain Angular Gyrus	brain
4	chr15:92096800-92102000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:92097000-92100000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:92097200-92100600	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:92097600-92100600	Weak transcription	Brain Substantia Nigra	brain
8	chr15:92098600-92099400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:92098800-92099400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:92099200-92101400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:92099200-92102000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:92099200-92105400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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