Variant report

Variant	rs28663369
Chromosome Location	chr15:92094413-92094414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11857102	0.91[ASN][1000 genomes]
rs28419666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28449942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28565923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57386562	1.00[EUR][1000 genomes]
rs58614601	1.00[EUR][1000 genomes]
rs61152865	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165991	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7181048	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74028273	1.00[EUR][1000 genomes]
rs74028274	1.00[EUR][1000 genomes]
rs74028277	1.00[EUR][1000 genomes]
rs74028417	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833095	chr15:92006793-92151176	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92091200-92098400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr15:92092200-92096000	Weak transcription	Brain Angular Gyrus	brain
3	chr15:92092200-92096200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:92092400-92096000	Weak transcription	HSMMtube	muscle
5	chr15:92092600-92095600	Weak transcription	Fetal Brain Male	brain
6	chr15:92093000-92095800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:92093000-92095800	Weak transcription	Brain Substantia Nigra	brain
8	chr15:92093000-92101400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:92093200-92095800	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:92093200-92102000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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