Variant report

Variant	rs74028417
Chromosome Location	chr15:92104927-92104928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92103023..92105218-chr15:92106149..92109069,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28419666	0.83[AMR][1000 genomes]
rs28663369	0.83[AMR][1000 genomes]
rs61152865	0.93[AMR][1000 genomes]
rs74028461	0.86[AMR][1000 genomes]
rs74028462	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833095	chr15:92006793-92151176	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92099200-92105400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:92100200-92106800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:92100600-92106200	Enhancers	Brain Hippocampus Middle	brain
4	chr15:92101400-92105000	Enhancers	Brain Cingulate Gyrus	brain
5	chr15:92102000-92106000	Enhancers	Brain Substantia Nigra	brain
6	chr15:92102000-92106800	Enhancers	Brain Anterior Caudate	brain
7	chr15:92102200-92105800	Enhancers	Brain Angular Gyrus	brain
8	chr15:92103400-92106000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr15:92104000-92106200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:92104200-92106000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:92104400-92105000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr15:92104400-92105000	Flanking Active TSS	HMEC	breast
13	chr15:92104400-92105000	Flanking Active TSS	NHEK	skin
14	chr15:92104400-92105000	Flanking Active TSS	Osteobl	bone
15	chr15:92104400-92105200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:92104400-92105600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:92104400-92105600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr15:92104400-92105600	Enhancers	Hela-S3	cervix
19	chr15:92104400-92105600	Enhancers	HSMM	muscle
20	chr15:92104400-92105600	Enhancers	HSMMtube	muscle
21	chr15:92104400-92105800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:92104400-92105800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:92104400-92105800	Enhancers	Stomach Smooth Muscle	stomach
24	chr15:92104400-92106000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:92104400-92106000	Enhancers	NHLF	lung
26	chr15:92104400-92106400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:92104400-92106600	Enhancers	Adipose Nuclei	Adipose
28	chr15:92104400-92106800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:92104600-92105200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:92104600-92105400	Enhancers	Ovary	ovary
31	chr15:92104600-92105600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:92104600-92105800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:92104800-92105200	Active TSS	NH-A	brain
34	chr15:92104800-92105200	Enhancers	NHDF-Ad	bronchial
35	chr15:92104800-92105600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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