Variant report

Variant	rs28566527
Chromosome Location	chr3:22990018-22990019
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1114382	0.85[ASN][1000 genomes]
rs11915727	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13318809	0.90[AFR][1000 genomes]
rs13318921	0.83[AFR][1000 genomes]
rs1824016	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1828675	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28419496	0.87[ASN][1000 genomes]
rs28650867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3907059	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4858465	0.87[ASN][1000 genomes]
rs4858466	0.87[ASN][1000 genomes]
rs58741876	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73822912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73822913	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73822914	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9812923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998236	chr3:22979632-23011352	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22986600-22992600	Weak transcription	Fetal Lung	lung
2	chr3:22988600-22990200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:22989000-22990200	Enhancers	Ovary	ovary
4	chr3:22989600-22992600	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:22990000-22990600	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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