Variant report

Variant	rs28569196
Chromosome Location	chr8:60971937-60971938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10094847	1.00[AFR][1000 genomes]
rs28531783	1.00[AFR][1000 genomes]
rs28655518	0.93[AFR][1000 genomes]
rs28667251	1.00[AFR][1000 genomes]
rs28668186	1.00[AFR][1000 genomes]
rs28722640	1.00[AFR][1000 genomes]
rs28750339	1.00[AFR][1000 genomes]
rs7819162	1.00[AFR][1000 genomes]
rs7837091	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60968400-60972000	Enhancers	Brain Germinal Matrix	brain
2	chr8:60968400-60975000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:60968800-60974200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:60969000-60972400	Enhancers	Brain Cingulate Gyrus	brain
5	chr8:60969000-60972400	Enhancers	Brain Hippocampus Middle	brain
6	chr8:60969200-60974200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:60970000-60973600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:60970600-60972400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:60971000-60972000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:60971200-60972400	Weak transcription	Brain Anterior Caudate	brain
11	chr8:60971400-60972400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:60971400-60975000	Weak transcription	Primary B cells from cord blood	blood
13	chr8:60971800-60972400	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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