Variant report

Variant	rs28667251
Chromosome Location	chr8:60972555-60972556
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10094847	1.00[AFR][1000 genomes]
rs28531783	1.00[AFR][1000 genomes]
rs28569196	1.00[AFR][1000 genomes]
rs28655518	0.93[AFR][1000 genomes]
rs28668186	1.00[AFR][1000 genomes]
rs28722640	1.00[AFR][1000 genomes]
rs28750339	1.00[AFR][1000 genomes]
rs7819162	1.00[AFR][1000 genomes]
rs7837091	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60968400-60975000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:60968800-60974200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:60969200-60974200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:60970000-60973600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:60971400-60975000	Weak transcription	Primary B cells from cord blood	blood
6	chr8:60972000-60973000	Enhancers	Fetal Brain Female	brain
7	chr8:60972400-60972600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:60972400-60972600	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr8:60972400-60972600	Flanking Active TSS	Brain Cingulate Gyrus	brain
10	chr8:60972400-60972600	Active TSS	Brain Germinal Matrix	brain
11	chr8:60972400-60972600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
12	chr8:60972400-60972600	Enhancers	Brain Substantia Nigra	brain
13	chr8:60972400-60972600	Enhancers	Duodenum Mucosa	Duodenum
14	chr8:60972400-60972800	Active TSS	Brain Angular Gyrus	brain
15	chr8:60972400-60973000	Enhancers	Fetal Kidney	kidney
16	chr8:60972400-60973200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:60972400-60973200	Flanking Active TSS	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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