Variant report

Variant	rs285723
Chromosome Location	chr15:93221596-93221597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93188028..93189824-chr15:93221223..93223457,2	MCF-7	breast:
2	chr15:93197893..93200797-chr15:93219606..93222964,3	MCF-7	breast:
3	chr15:93195909..93200568-chr15:93219965..93222988,4	MCF-7	breast:
4	chr15:93210700..93212234-chr15:93221570..93224514,2	MCF-7	breast:
5	chr15:93179227..93181968-chr15:93219677..93222839,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12917366	1.00[CHB][hapmap]
rs16947186	1.00[CHB][hapmap]
rs184047	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206350	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206355	1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2132615	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs285720	0.90[EUR][1000 genomes]
rs285728	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs285737	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs285738	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285739	0.84[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285741	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs285743	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs285744	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285750	0.80[EUR][1000 genomes]
rs285764	1.00[CHB][hapmap]
rs285766	1.00[CHB][hapmap]
rs285767	1.00[CHB][hapmap]
rs89062	0.80[EUR][1000 genomes]
rs99521	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1036897	chr15:93211991-93239388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs285723	LOC400451	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93211800-93224400	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:93214800-93232200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:93216800-93224200	Weak transcription	Fetal Stomach	stomach
4	chr15:93217000-93221600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:93220400-93221600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:93220400-93221600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:93220600-93221600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr15:93221400-93221800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr15:93221400-93224400	Weak transcription	Placenta	Placenta

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