Variant report

Variant	rs285728
Chromosome Location	chr15:93225009-93225010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93186486..93189076-chr15:93224544..93226997,2	MCF-7	breast:
2	chr15:93153824..93155691-chr15:93224962..93227625,2	MCF-7	breast:
3	chr15:93211008..93212607-chr15:93224568..93226247,2	MCF-7	breast:
4	chr15:93224785..93226821-chr15:93245528..93247882,2	MCF-7	breast:
5	chr15:93180560..93183388-chr15:93224923..93226823,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs184047	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs206350	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs206355	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs285723	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs285737	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs285738	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs285739	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs285743	0.85[AMR][1000 genomes]
rs285744	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs285750	0.83[EUR][1000 genomes]
rs285751	0.83[EUR][1000 genomes]
rs285752	0.83[EUR][1000 genomes]
rs285753	0.83[EUR][1000 genomes]
rs89062	0.83[EUR][1000 genomes]
rs99521	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1036897	chr15:93211991-93239388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs285728	LOC400451	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93214800-93232200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93221800-93226200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:93224000-93226800	Enhancers	HSMM	muscle
4	chr15:93224200-93226600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:93224200-93226600	Enhancers	Adipose Nuclei	Adipose
6	chr15:93224200-93226800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:93224200-93226800	Enhancers	Fetal Stomach	stomach
8	chr15:93224400-93225200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:93224400-93225400	Enhancers	Placenta	Placenta
10	chr15:93224400-93226000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr15:93224400-93226600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:93224400-93226600	Enhancers	HSMMtube	muscle
13	chr15:93224400-93226800	Enhancers	Fetal Muscle Leg	muscle
14	chr15:93224400-93227200	Enhancers	Fetal Lung	lung
15	chr15:93224800-93225600	Enhancers	NHLF	lung
16	chr15:93224800-93226200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:93224800-93227000	Enhancers	Fetal Muscle Trunk	muscle
18	chr15:93225000-93225400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:93225000-93226200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:93225000-93227000	Enhancers	NHDF-Ad	bronchial
21	chr15:93225000-93231800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:93225000-93232000	Weak transcription	Ovary	ovary

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